DriverNet

DriverNet is an R package for detection of driver genomic aberrations. DriverNet utilizes genome and transcriptome data to identify driver mutations. Given a list of genomic aberrations and transcritome data, DriverNet will output a ranked list of genes that are more likely to affect the expression of genes.

Publications

In preparation (Estimated date of submission: Jan 2012)

Download

Download the first version: drivernet.tar.gz.

Installation (TBD)

1. Download and extract drivernet.tar.gz into the desired folder <$install_dir>:
   1. cd <$install_dir>
   2. tar xvzf drivernet.tar.gz
2. Build the R package: ./create_package.sh
3. Install the package: R CMD INSTALL DriverNet_1.0.tar.gz (R version 2.14.0 is needed)
4. Run the following commands in R:
   1. library(DriverNet)
   2. example(DriverNet)