Software

Updates related to our software.

SNVMix

SNVMix: Detecting single nucleotide variants from next generation sequencing data SNVMix is designed to detect single nucleotide variants from next generation sequencing data. SNVMix is a post-alignment tool. Given a pileup file (either Maq or Samtools format) as input and model parameters, SNVMix will output the probability that each position is one of three genotypes:  […]

JointSNVMix software released

JointSNVMix Description JointSNVMix implements a probabilistic graphical model to analyse sequence data from tumour/normal pairs. The model draws statistical strength by analysing both genome jointly to more accurately classify germline and somatic mutations. Latest Release v0.6.0 The latest release v0.6.0 is now available. DOWNLOAD and INSTALLATION instructions available.