Welcome!


Our group focuses on research in computational biology and cancer genomics at the BC Cancer Agency in Vancouver BC. We are interested in understanding cancer genomes from the perspective of identifying pathogenic driver alterations and how tumours evolve over time. Our work involves the development of statistical models, algorithms and computational approaches to analyze large, high dimensional genomics and transcriptomic data sets derived from tumours in order to describe mutational landscapes of cancer subtypes and quantify clonal diversity and intratumoural heterogeneity. Much of our work is devoted to analysis and interpretation of next generation sequencing data applied in cancer-focused experimental designs.

Shah Lab, BCCA

Shah Lab, BCCA; L to R: Gavin Ha (PhD cand), Jiarui Ding (PhD cand), Jamie Rosner (bioinformatician), Sanja Rogic (Gascoyne lab alumni), Andrew McPherson (PhD cand), Mike Peabody (alumni), Fong Chan (PhD cand), Ali Heravi-Moussavi (alumni), Reza Haffari (alumni - Monash University), Karey Shumansky (bioinformatician), Ali Bashashati (Research Associate), Sohrab Shah (principal investigator), Andy Roth (PhD cand). Absent Ryan Giuliany (MSc cand)

Some of our recent work is listed below:

Dr. Sohrab Shah,Jiarui Ding,Publications,Research,Software

MutationSeq paper on feature based classifiers for somatic mutation detection published

Jiarui Ding; Ali Bashashati; Andrew Roth; Arusha Oloumi; Kane Tse; Thomas Zeng; Gholamreza Haffari;...

Publications,Research

Discovery of CIITA gene fusions in lymphoid cancers published in Nature.

Today, our discovery that CIITA is a recurrent gene fusion partner in lymphoid cancers appeared in...

Publications

ARID1A mutations in ovarian cancer published in New England Journal of Medicine

We have discovered recurrent loss of function mutations in ARID1A in endometriosis associated...

Publications

Supplemental material for Shah et al Nature (2009)

We have posted an archive of all the supplemental material accompanying the following paper:...

Recent Posts

  • Triple negative breast cancer paper published in Nature

    Today, the results of our work interpreting the genomes of primary triple negative breast cancers appeared in Nature: “The clonal and mutational evolution spectrum of primary triple-negative breast cancers”. Many many thanks to all of the members of the lab for dedication and hard work on this project.

    Posted on 4th Apr 2012 0 comments
  • JointSNVMix paper published: a statistical model for somatic point mutation detection

    Andrew Roth, Ryan Morin, Jiarui Ding, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Samuel Aparicio and Sohrab P. Shah. JointSNVMix : A Probabilistic Model For Accurate Detection Of Somatic Mutations In Normal/Tumour Paired Next Generation Sequencing Data. Bioinformatics. 2012 doi: 10.1093/bioinformatics/bts053 SOFTWARE

    Posted on 28th Jan 2012 0 comments
  • MutationSeq paper on feature based classifiers for somatic mutation detection published

    Jiarui Ding; Ali Bashashati; Andrew Roth; Arusha Oloumi; Kane Tse; Thomas Zeng; Gholamreza Haffari; Martin Hirst; Marco A. Marra; Anne Condon; Samuel Aparicio; Sohrab P. Shah. “Feature based classifiers for somatic mutation detection in tumour-normal paired sequencing data.” Bioinformatics 2011; doi: 10.1093/bioinformatics/btr629 [PDF] [SOFTWARE]

    Posted on 15th Nov 2011 0 comments